Protein Info for BPHYT_RS36315 in Burkholderia phytofirmans PsJN

Annotation: CagE TrbE VirB component of type IV transporter system

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 849 PF03135: CagE_TrbE_VirB" amino acids 184 to 377 (194 residues), 74.3 bits, see alignment E=1.3e-24 PF19044: P-loop_TraG" amino acids 630 to 780 (151 residues), 34.2 bits, see alignment E=1.2e-12

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_7347)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2TH83 at UniProt or InterPro

Protein Sequence (849 amino acids)

>BPHYT_RS36315 CagE TrbE VirB component of type IV transporter system (Burkholderia phytofirmans PsJN)
MTVYDELIAKEEPATKYIPYSKQITPTTCTTVERDLTRTIRCDGVPFETMSDEELNGFTR
SWFAAINTLGANNNRVALWSHVVRSKLRYDLSGIKYDNYFSQLFGDQIAERVGKKTFFQN
ELFLSPVYRPAPGRAERIGAALDKQGGSDVLAAARDEIDRITNQLVRSLRRYNPSVLGVE
EFDGEKPAISHLQAFYGRLLNADVGPVPLDSYSVRFAIQRNELHFGREIIEIEGPVSSRY
AGVVGLKAPYGAENAKVNIFHGLLRLPYEFVLSQSLTFLPLNKADKFLQTQISQFSSTDA
NSLQLKELKDARERLQAGKFGMCEHEFILTIYGDSIEEVNEGINEVIAVFEEKNLTLIRK
KRGKLITQYFGMLPGNFLTGRLDAMPVSTDNFAAFFPLHNFFTGNAEGSQWGSPIALMES
TSNGPIFMNYHVSRRRLRNQEVRLEYTPEENEEDEEDEQAEQEGIITPKRKAHKKELGNY
QVIGPSGSGKTLTKLMLRTLMRKVRPGKGMKPFKTFAWDKDYGEEILVNALGGVYFRLED
GKPTGLNPYALQNNEVNCQFIHELFMWCACKDPAYLRTGDDDKILSDVIQDVYKLPEHLR
RPARMMDTLPGSSSAVQGPGGARIVSLKAALVRWVEGGQYSWVLDNSRDLFDLTRANDFG
FDMTKFLNNDFARTPIQLLINHKIDLSVDGNPFVLDIAEAWKALKDPFMQEFIGDKAKTV
RKLQGIIGLDTQDPTDLSTSPIRGTLLQQFPTQIILPNDRAKREDYVEGLGLTDREYSLV
REGMLDEPGKFLFKQGNDSVVVRNDLGGMDDMIAVLSASIDNVPLVRELIEAHGNKPEIW
LPQFFRQRV