Protein Info for BPHYT_RS35960 in Burkholderia phytofirmans PsJN

Annotation: ATPase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 540 transmembrane" amino acids 15 to 37 (23 residues), see Phobius details amino acids 45 to 79 (35 residues), see Phobius details amino acids 94 to 112 (19 residues), see Phobius details PF13493: DUF4118" amino acids 24 to 122 (99 residues), 64.3 bits, see alignment E=2.8e-21 TIGR00229: PAS domain S-box protein" amino acids 125 to 240 (116 residues), 51.4 bits, see alignment E=5.9e-18 PF00989: PAS" amino acids 126 to 223 (98 residues), 41.7 bits, see alignment E=3.6e-14 amino acids 254 to 359 (106 residues), 25.8 bits, see alignment E=3.3e-09 PF08448: PAS_4" amino acids 130 to 236 (107 residues), 40.4 bits, see alignment E=1.1e-13 PF13426: PAS_9" amino acids 133 to 218 (86 residues), 32.5 bits, see alignment E=3.1e-11 PF08447: PAS_3" amino acids 145 to 224 (80 residues), 26.1 bits, see alignment E=2.9e-09 PF00512: HisKA" amino acids 385 to 449 (65 residues), 27.8 bits, see alignment E=7.7e-10

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_7271)

Predicted SEED Role

"Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY" in subsystem Bacterial Chemotaxis or Flagellar motility or Two-component regulatory systems in Campylobacter

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2TH07 at UniProt or InterPro

Protein Sequence (540 amino acids)

>BPHYT_RS35960 ATPase (Burkholderia phytofirmans PsJN)
MRATVSSHESKSWRYLATLWTGGCIALGAVTAACVLWDQELGTAGFCLLVVVVLLSLLDN
FISSALFSVIGAMLLGYFFTEPVHSIHVSKPRDLFSLLAFLVTSIAITTFVRRIRRVEKT
QRAQAQLLELTHDIIIVRDKDDVITYWNQAAEILYGWTKEEAIGEFIDELLSSVFPLPRD
QLQRIFHRDGQWEGELIHTRRDGTKIIVTSRWALQRDSAGNPLATLETNNDITQRRHAED
LLRKSQAQYFAEAQKLSRTGSFGWNISSGELFWSDETFSIFEYDLAVAPNIELVRQRVYP
DDLPLFDEKIARARGFTVDFDIEHRLLFPDGRIKHLHVVGRSASGQPDNRAFIGAVMDVT
GAKQTEEQLRHTQSELERVSRITALGELSASIAHEVGQPLAAIVTSGEACLRWLHRQPPN
MEEIEGCVSHMTDQGNRAAAIVQRVRALMKGAPPDRAPIAINDVIGKAINSHTSPKNQRR
HYRSKSGSWHSNRTARFHSGQQRAIRDLCRPPGIQKIPPRSRTSAIPNPAMSIGTRHTRR