Protein Info for BPHYT_RS35805 in Burkholderia phytofirmans PsJN

Annotation: DSBA oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 524 transmembrane" amino acids 21 to 45 (25 residues), see Phobius details amino acids 57 to 76 (20 residues), see Phobius details amino acids 88 to 113 (26 residues), see Phobius details amino acids 119 to 138 (20 residues), see Phobius details amino acids 145 to 166 (22 residues), see Phobius details amino acids 174 to 193 (20 residues), see Phobius details amino acids 213 to 230 (18 residues), see Phobius details amino acids 241 to 259 (19 residues), see Phobius details amino acids 280 to 303 (24 residues), see Phobius details amino acids 315 to 332 (18 residues), see Phobius details amino acids 344 to 364 (21 residues), see Phobius details amino acids 370 to 392 (23 residues), see Phobius details amino acids 413 to 433 (21 residues), see Phobius details amino acids 492 to 515 (24 residues), see Phobius details PF07690: MFS_1" amino acids 27 to 422 (396 residues), 165 bits, see alignment E=3.7e-52 PF06609: TRI12" amino acids 29 to 443 (415 residues), 36.2 bits, see alignment E=4e-13 PF00083: Sugar_tr" amino acids 56 to 193 (138 residues), 35.3 bits, see alignment E=9.6e-13

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_7236)

Predicted SEED Role

"Permeases of the major facilitator superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2TAM3 at UniProt or InterPro

Protein Sequence (524 amino acids)

>BPHYT_RS35805 DSBA oxidoreductase (Burkholderia phytofirmans PsJN)
MSTGFTAPPPSGQLLPFRESLLAMLGIAFVAMLVALDQTIVGTALPRIVADLKGFDLYAW
VATSYMLASVITIPIFGRLGDLFGRKRFLIAAILLFTGASVLCGLANSMLLLVVSRGLQG
IGGGILIGTVFATVADLFPNPKLRLRWLAFVTSAFGVSNMIGPTLGGMLTQYGGWRLVFF
VNVPVGLVSLLFVQRFLPPLLHLRCKGPVRLDWLGAFVLAVTFGSLQVLIELFPRRGIDT
TTIVLTVVAATCGLILWLWERRIGYPIVPVDMLMDRKLSALFAMSVLGGFALFSLVFYVP
LLFQGGYAMSAHDSGMLITPLLLGTTVGSVLNNRIVTRVRRANGIMYVGFALSALACLSV
VVLRGTEPHLVWASCMGISGLGLGLVATSLTVCSQQIVGRDHVGAATALLQSLRTFGGML
GTVMTGALLGHLYSRGVHRSLDSYQATQWFKSFASPELLVDRAEQAALINRLVSAGQSGD
AMMRSAREALVQSIHIGILVAGAAALIGLCLAWFVPPVRISYPE