Protein Info for BPHYT_RS35415 in Burkholderia phytofirmans PsJN

Annotation: DEAD/DEAH box helicase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 479 PF04851: ResIII" amino acids 25 to 189 (165 residues), 34.7 bits, see alignment E=2.5e-12 PF00270: DEAD" amino acids 25 to 194 (170 residues), 165.3 bits, see alignment E=1.6e-52 PF00271: Helicase_C" amino acids 231 to 339 (109 residues), 99.4 bits, see alignment E=2.2e-32

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_7154)

Predicted SEED Role

"ATP-dependent RNA helicase PA3950" in subsystem ATP-dependent RNA helicases, bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2TAD9 at UniProt or InterPro

Protein Sequence (479 amino acids)

>BPHYT_RS35415 DEAD/DEAH box helicase (Burkholderia phytofirmans PsJN)
MSFASLGLIDPLLRNLQDLNYQTPTPVQVKAIPAVLSGNDVMAAAQTGTGKTAGFALPLL
QRLVQHGPEVSSNRARVLVLVPTRELAEQVLQSFVAYGKGLDLRFLAAYGGVSINPQMMK
LRKGVDVLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFERELNAVFAALPAQR
QTLLFSATFTDDIRTMAAGILRGPVNISVSPPNATASRIKQWVVPVDKKNKPDLFMHLVA
ENNWEHALVFVKTRNGVDYLAAILDKAGYSVDTIHGDKPQPARLRALERFKTGEVSMLVA
TDVAARGLDIDNLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLAAIE
ALIRQTLRREEEPGFEAEHRVPQTSATGQIIKKPKKPKKPKVPQAAPGAVQALSKKPRPQ
IDESKRKPAAQGAVAASKGTSLSSNSPFAMQKPRSKPASKPAAGSRMPAGKPAGGRGKR