Protein Info for BPHYT_RS35145 in Burkholderia phytofirmans PsJN

Annotation: PEBP family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 189 signal peptide" amino acids 1 to 33 (33 residues), see Phobius details TIGR00481: Raf kinase inhibitor-like protein, YbhB/YbcL family" amino acids 55 to 184 (130 residues), 108.2 bits, see alignment E=1.5e-35 PF01161: PBP" amino acids 58 to 187 (130 residues), 128.5 bits, see alignment E=1.2e-41

Best Hits

KEGG orthology group: K06910, (no description) (inferred from 100% identity to bpy:Bphyt_7099)

Predicted SEED Role

"YbhB and YbcL"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2TA85 at UniProt or InterPro

Protein Sequence (189 amino acids)

>BPHYT_RS35145 PEBP family protein (Burkholderia phytofirmans PsJN)
MIGSYRFGVARRLLPVGVSAALALAAVHVVAAEVFVVSSPGLADGGTLDSSHAASANNCG
GGNVSPALQWRNAPAGTKSYAVTLFDPDGAKGLGIVHWVLYGVAPSTTSLDAGASQPPGS
VAGTNRTGGTGYYGPCPPVGDNPHHYVAQVYALDLPPDALPPGLTRDALFAAIKDHVIAA
TSTVLRYGR