Protein Info for BPHYT_RS34760 in Burkholderia phytofirmans PsJN

Annotation: sensor histidine kinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 763 transmembrane" amino acids 37 to 58 (22 residues), see Phobius details amino acids 299 to 316 (18 residues), see Phobius details amino acids 322 to 342 (21 residues), see Phobius details PF02518: HATPase_c" amino acids 483 to 600 (118 residues), 55.9 bits, see alignment E=5.7e-19 PF00072: Response_reg" amino acids 625 to 742 (118 residues), 47.7 bits, see alignment E=1.7e-16

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_7023)

Predicted SEED Role

"FOG: PAS/PAC domain"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T7Z5 at UniProt or InterPro

Protein Sequence (763 amino acids)

>BPHYT_RS34760 sensor histidine kinase (Burkholderia phytofirmans PsJN)
MTPDRFEPPPASRLAASRQDEALFPAVPEQNFHVRRITLIALLIAAIVLPCVYVAAMAIS
DLRARDADATDMTLRTVRVAEEHALKVFDMNETLDARIVDLTQGLDDDGIRAREAAIHEK
LRVMGGGYPQVAAVSIFGRDGALLASSRYLPAPAISVGEREDFIGIRDGKDLEHVSKVMT
GHVAGEQVFNMGVERLGADGSFAGVVSVALRPSYFDAFYRELLGGSGSSNGTPMTMSLVR
ADGSILAHYPRAPREPNAMAPRTPFAEALAQGRRAGVVRMHSNVDGEDLILAFRHVGSYP
VYVVCGYRASAIWAAWYRHLGVLILSMFTPSIALWCVIWLSLRRLGAEQEAWERWQAEAS
MRRSIESAYRQSRKMEALGTLVGSVAHDFNNLLMILSANVQIARRRGVTGLDRELSAMER
ALKSGQSLTRQLLGVARKQPLRNETLSLERWLPACRELLRASLGAKVSLVIDIGVEIWPM
RVDVAELELALINVAVNARDAMPNGGRFTVRATNIHFRHEEGFPLTGDFVQLSLEDTGAG
MAPEVLARAFEPLFTTKPKGMGTGLGLPQVFAFCERSGGLAAIDSAVGAGTSVRLYLPRA
TAEPEVDGPPDSGSEESGAPSGLRILLVEDNEEVAAGTEALLQMMGHQVTCVFNADTALR
LFDDAHARRARTGEPLPFDLVLSDIHMPGTLNGIDLAEAVLAFDTKLPVILVTGYAEELD
RARHVDVRVLSKPFDIGLLEELLQTIQRDLTQTGADPAAHTAE