Protein Info for BPHYT_RS34635 in Burkholderia phytofirmans PsJN

Annotation: 50S ribosomal protein L21

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 159 PF07080: DUF1348" amino acids 12 to 141 (130 residues), 228.1 bits, see alignment E=1.3e-72

Best Hits

KEGG orthology group: K09958, hypothetical protein (inferred from 100% identity to bpy:Bphyt_7000)

Predicted SEED Role

"COGs COG3558"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T7X2 at UniProt or InterPro

Protein Sequence (159 amino acids)

>BPHYT_RS34635 50S ribosomal protein L21 (Burkholderia phytofirmans PsJN)
MADTIETRPPLPPFTRETAIQKVRAAEDGWNTRDPERVSLAYTVDSVWRNRAEFTKGRAE
IVGLLRRKWARELDYRLIKELWAFTDNRIAVRFAYEWHDDSNNWFRSYGNENWEFDEHGL
MAHRHASINDMPIREADRLYHWPLGRRPDDHPSLSDLGL