Protein Info for BPHYT_RS34570 in Burkholderia phytofirmans PsJN

Annotation: chemotaxis protein CheA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 796 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details transmembrane" amino acids 186 to 206 (21 residues), see Phobius details PF12729: 4HB_MCP_1" amino acids 1 to 161 (161 residues), 41.7 bits, see alignment E=2e-14 PF00672: HAMP" amino acids 204 to 257 (54 residues), 39.9 bits, see alignment 8.7e-14 PF01627: Hpt" amino acids 430 to 510 (81 residues), 31.5 bits, see alignment E=3.6e-11 PF02518: HATPase_c" amino acids 627 to 761 (135 residues), 40.5 bits, see alignment E=6.8e-14

Best Hits

KEGG orthology group: K03407, two-component system, chemotaxis family, sensor kinase CheA [EC: 2.7.13.3] (inferred from 100% identity to bpy:Bphyt_6986)

Predicted SEED Role

"Signal transduction histidine kinase CheA (EC 2.7.3.-)" in subsystem Bacterial Chemotaxis or Flagellar motility or Two-component regulatory systems in Campylobacter (EC 2.7.3.-)

Isozymes

Compare fitness of predicted isozymes for: 2.7.13.3, 2.7.3.-

Use Curated BLAST to search for 2.7.13.3 or 2.7.3.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2TA26 at UniProt or InterPro

Protein Sequence (796 amino acids)

>BPHYT_RS34570 chemotaxis protein CheA (Burkholderia phytofirmans PsJN)
MTIRHRITLLVVLMFVALSAIGGYAVYQTRGSAAEVRKVTEGVVPSALASADLVSQVKDV
QLATMTLVYAPDANMVAQAQDELKKKRASLQQALALQAKDAASHAQKGLVAQANDSLENY
FSAIAETAKMKADGKNELAQAYLFANVAQYRDELEGIVETLRVEKNREKDEAISALNTTL
STTTTAIAAVTGIAIILLTSIGSLLYRQITRPLSRMQAMMSEIASSQDFTRRVPVGRLDE
IGHSIVAFNGMIEKIQESSAQLKQKTADIQAMLQNMQQGILTVIDGAVIHAEYSAYLEDI
FETKDIAGRGLMDLVFADTDLGSDALSQVDAATHACLGEDCINFAFNQHLLVGEISKRMP
DGRVKILDLSWSAITDENDVIQRLMLCVRDVTELRKLAAEASEQRRRLDMIGEILAVSEE
KFHHFIESSAGFISENERIIRKHSEADHAAIAELFRNMHTIKGNARTYNLQHLTNVVHET
EQSYHELRQPDADRSWDQEHLMSELTRVREAIESYAKINEQSLGRKNKNQTNTAANSAHY
VMVANEHIQHTLSMLEQTNAGELHELQSMRDALRRTLRALGSESVRDALSGVLDSLPSLA
SELGKPAPNVRIDDNGYRLRGQAGGTLNNVFMHLLRNSMDHGIETAEARSALGKVPAGTI
DIEVGVDNGALQITLSDDGRGLALERIRGIAMERGWIGHDDTLSDEAIADFIFRPGFSTA
ETVTELSGRGVGMDAVRDFLKRANGSIELRFTDDRKGAAFRQFQTIVCLPDNVAVDTLGV
EARREAGTLQLDAMAD