Protein Info for BPHYT_RS34345 in Burkholderia phytofirmans PsJN

Annotation: transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 466 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details transmembrane" amino acids 29 to 51 (23 residues), see Phobius details amino acids 61 to 81 (21 residues), see Phobius details amino acids 101 to 127 (27 residues), see Phobius details amino acids 139 to 157 (19 residues), see Phobius details amino acids 177 to 198 (22 residues), see Phobius details amino acids 232 to 252 (21 residues), see Phobius details amino acids 281 to 303 (23 residues), see Phobius details amino acids 310 to 326 (17 residues), see Phobius details amino acids 332 to 351 (20 residues), see Phobius details amino acids 358 to 385 (28 residues), see Phobius details amino acids 410 to 430 (21 residues), see Phobius details amino acids 442 to 462 (21 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_6939)

Predicted SEED Role

"D-beta-hydroxybutyrate permease" in subsystem Polyhydroxybutyrate metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T9X9 at UniProt or InterPro

Protein Sequence (466 amino acids)

>BPHYT_RS34345 transporter (Burkholderia phytofirmans PsJN)
MSFVIVLAALAFLMFAAYRGYSVILFAPIAALGAVLLTDPAAVAPVFTGIFMEKMVGFVK
LYFPVFLLGAVFGKVIELSGFSESIVAAAIRYIGRSRANAVIVAVCALLTYGGVSLFVVV
FAVYPFAAELYRQSNIPKRLMPGAIALGAFSFTMDSLPGTPQIQNIIPTTFFKTTSWAAP
ALGVIGSLFIIVVGLTYLEWRRRSAMATGEGYGTELVNEPDRVESKQLPHPLLAVAPLVL
VGVANFLLTRWIPNWYGASYTVAPDILPGVHAPVTTTIKAVVAIWAVEGALLLGIIMVVV
TAFNRVRERFAIGTKAAVAGALLASLNTASEYGFGGVIAALPGFLVVSNALKSIPNPLVN
AAVSVSSLAGITGSASGGMSIALAAMSDTFIKGAEAAHIPMEVLHRVVAMASGGMDTLPH
NGAVITLLAVTGLTHRQSYRDIFAVTVIKTMAVFFVIAVYYATGLV