Protein Info for BPHYT_RS34300 in Burkholderia phytofirmans PsJN

Annotation: major facilitator transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 460 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details transmembrane" amino acids 76 to 97 (22 residues), see Phobius details amino acids 108 to 126 (19 residues), see Phobius details amino acids 134 to 154 (21 residues), see Phobius details amino acids 166 to 189 (24 residues), see Phobius details amino acids 195 to 214 (20 residues), see Phobius details amino acids 273 to 291 (19 residues), see Phobius details amino acids 311 to 329 (19 residues), see Phobius details amino acids 336 to 354 (19 residues), see Phobius details amino acids 360 to 383 (24 residues), see Phobius details amino acids 395 to 417 (23 residues), see Phobius details amino acids 423 to 446 (24 residues), see Phobius details PF07690: MFS_1" amino acids 47 to 325 (279 residues), 101.6 bits, see alignment E=4.4e-33 PF00083: Sugar_tr" amino acids 74 to 457 (384 residues), 187.8 bits, see alignment E=3.6e-59

Best Hits

KEGG orthology group: K08368, MFS transporter, putative metabolite transport protein (inferred from 100% identity to bpy:Bphyt_6930)

Predicted SEED Role

"Inner membrane metabolite transport protein YgcS"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T9X0 at UniProt or InterPro

Protein Sequence (460 amino acids)

>BPHYT_RS34300 major facilitator transporter (Burkholderia phytofirmans PsJN)
MSNQDMQVAALGLAPTLPAAAASAHGPIPLDDVPLNAFHVKIAGLTFGAHFTEGFALGTI
GYALASLNRQMPLDAFWMGMIGSSALMGIFIGSLVFGWLSDRMGRQKIFLLSFIIITAAA
FAQFYVRSPLELCLLRVLIGFGMGGDFAVGHAILAEFSPRKHRGTLLGSFSVVWTIGYVV
ANVLGMQYADASPDAWRWLLASAGVPALIVLVLRMGTPESPRWLHGKGRTAEAKSIVLKH
FGANVTLDGGHDDHAQSAGGFMRLFKADLIRRTIFNCAFFVCLVIPYFAVYTFLPTILKA
IHLNNDSSADFLLNGFLVLGALIGIWLTIKLARRTFLIGSFAVTCVSLIALSVLPESATL
GMIVAFGIFTLTMSAFSNLVGVFPPECFPTEVRACGVGLAIACSRLGSAVGTFLLPLGIV
HLGFHITMMVLAAVLLIGMLVSIAWAPETKHLTLNEASGA