Protein Info for BPHYT_RS34250 in Burkholderia phytofirmans PsJN

Updated annotation (from data): ABC transporter for L-rhamnose/L-fucose/xylitol, substrate-binding component
Rationale: Specifically important for utilizing L-rhamnose, L-fucose, and xylitol.
Original annotation: ABC transporter substrate-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 349 signal peptide" amino acids 1 to 39 (39 residues), see Phobius details PF00532: Peripla_BP_1" amino acids 42 to 229 (188 residues), 42.8 bits, see alignment E=4.9e-15 PF13407: Peripla_BP_4" amino acids 44 to 303 (260 residues), 169.4 bits, see alignment E=1.2e-53

Best Hits

KEGG orthology group: K02058, simple sugar transport system substrate-binding protein (inferred from 100% identity to bpy:Bphyt_6920)

Predicted SEED Role

"Ribose ABC transporter, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)" in subsystem Bacterial Chemotaxis (TC 3.A.1.2.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T9W0 at UniProt or InterPro

Protein Sequence (349 amino acids)

>BPHYT_RS34250 ABC transporter for L-rhamnose/L-fucose/xylitol, substrate-binding component (Burkholderia phytofirmans PsJN)
MSFAKGPLMARRLFRTSLSVTAAAACFAGLAVSGAAQAADSGKIGLGLPLLTSPFWQSYN
NYLPKYAKESGLDILAPVNSNGDPVQQITDMNNLLNLGAKGIVVGPLDSAAISRALDAAA
AKNVPVVAVDVAPTQGKVAMVVRADNHAYGEKACKYIGEHVKSGKVVQIMGDLASVNGRD
RSEAFRSCLKGYPGLTLLEIPASWKGDVAATALDSLLTANPDVKAIYMQAGGVYLSPTLQ
TLRRKQMLFPAGDAKHVVIVSNDGIPQEFDAIRRGDIDATVSQPADSYAKYGLFYIKAAL
AGQTFKPGPTDHGSNIIQLAPGILEDQLPAPLVTKSNVDDKALWGNTVK