Protein Info for BPHYT_RS34190 in Burkholderia phytofirmans PsJN

Annotation: chemotaxis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 540 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details transmembrane" amino acids 187 to 209 (23 residues), see Phobius details PF02203: TarH" amino acids 1 to 167 (167 residues), 161.6 bits, see alignment E=2.8e-51 PF00672: HAMP" amino acids 209 to 257 (49 residues), 32.5 bits, see alignment 1.3e-11 PF00015: MCPsignal" amino acids 324 to 479 (156 residues), 178.8 bits, see alignment E=1.3e-56

Best Hits

KEGG orthology group: K05875, methyl-accepting chemotaxis protein II, aspartate sensor receptor (inferred from 100% identity to bpy:Bphyt_6908)

Predicted SEED Role

"Methyl-accepting chemotaxis protein I (serine chemoreceptor protein)" in subsystem Bacterial Chemotaxis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T9U8 at UniProt or InterPro

Protein Sequence (540 amino acids)

>BPHYT_RS34190 chemotaxis protein (Burkholderia phytofirmans PsJN)
MFSKIKVASGLLCVLAAFCVFQLVTVGLGFWSLTRTHDDVGDLSNIALKQVDAVNETTQH
LMDARINLSRAGTRMVRGGSEPTDIVQHAREQLTAADQSFAAFMSAPKTGDDNGTRAAAL
AERYKKLHDALAELVQFLDSNNIQAFLDQPTQSFQDAYLGESHNFVQFGNAASRASLDSI
DTRMATFRAVSIVILVALVAGTFAVYAGLRRGVVAPLEEAGRHFDRIAQGRLDQPIAARG
TNEIGRLFSGLAKMQASVARTVQTVRESADSIHLGADEIATGNADLSARTENQAASLEET
ASSMEELTATVRQNAEHAREANALAETALEATSRGSEVVNEVVDKMRGIAQSSDKIAEII
SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRGLAQRSAQSAKEIKTLISESV
AEIQGGSALVEHAGSAMSNVSASISRVTQMMAEISASSLEQSTGIEQVNQAVVQMDEMTQ
QNAALVEEAAAAAASLHQQTQQLKQAVSVFEISESVLRMQQIDEARGQSADFSLSGMRAI