Protein Info for BPHYT_RS33890 in Burkholderia phytofirmans PsJN

Annotation: fimbrial protein FimV

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 634 signal peptide" amino acids 1 to 41 (41 residues), see Phobius details transmembrane" amino acids 323 to 340 (18 residues), see Phobius details

Best Hits

Predicted SEED Role

"Probable transmembrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (634 amino acids)

>BPHYT_RS33890 fimbrial protein FimV (Burkholderia phytofirmans PsJN)
MNLRLSSLRAMFNLPGASRLTAAAAVSAALVCAGMGSAAAAPGDAASAPDAASVSYANGG
QVTVRPGQSLNDVAIAVTQSHDKATLARASRALFDANPNAFMSHDPSRLRLGAVLTVPVL
DASGALAASAAGVAAAPASAPNAASATSAASAVAQANAAAASAASAAAPAAPAVSAMASA
ATEASSATPGSTASSAPIAGSQAAALPASGTHAWSGSIQPSASEAEGASAAGAGTTPATT
AAQPASQPRAQVSSLQQLLALKNRVLMELQKHGIGGTPPATNTASTGVAQPAVGVSSAAA
VPSHGSTPVASTSSGAGMSQTELSVAAAIGAALVALLAALRMGRRKRERLAAEAASADGG
GAASARATGPQDVVSTREQIPARGASDVGDDLPVGNAAALAAAEREAAEGDAAAREMEER
VAAERDAEIRQAAAREAAEKAEEQAAAERAAAEQAAAEHAAAERTAAEQAAAEHAAAERT
AAEQVEAEHAAAERTAAEQAEAERAAVERAIGERAAENQPAAAHTTFPSPGLNAPDHISQ
ERDAAPASVEPAQLSPNVAPSAQGGSIPEPLPGPHHDDFDSATTAASLAAAAELGADALP
LTPLEPVDDAFLHEEPAHRLQWDDTPAARLEPSI