Protein Info for BPHYT_RS33670 in Burkholderia phytofirmans PsJN

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 152 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details transmembrane" amino acids 44 to 64 (21 residues), see Phobius details amino acids 71 to 92 (22 residues), see Phobius details amino acids 98 to 118 (21 residues), see Phobius details amino acids 126 to 146 (21 residues), see Phobius details PF03073: TspO_MBR" amino acids 11 to 146 (136 residues), 149.9 bits, see alignment E=2.2e-48

Best Hits

Swiss-Prot: 39% identical to TSPO_CHLTE: Tryptophan-rich protein TspO (crtK-2) from Chlorobaculum tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806 / TLS)

KEGG orthology group: K07185, tryptophan-rich sensory protein (inferred from 100% identity to bpy:Bphyt_6800)

Predicted SEED Role

"Tryptophan-rich sensory protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T9J2 at UniProt or InterPro

Protein Sequence (152 amino acids)

>BPHYT_RS33670 hypothetical protein (Burkholderia phytofirmans PsJN)
MRRWPSLVVFLFLAFAAAFIASRFLPDAWYVALQKPAFNPPDWVFPPAWSVLYVLMAIAA
WRVWKRDGLSAAIVLWLVQLLFNAAWMWLFFGLHRADVALADILILLVLIVALTFAFWRR
DRWAGGLLMPYVAWVAFAAVLNHALWQLNPAV