Protein Info for BPHYT_RS33665 in Burkholderia phytofirmans PsJN

Annotation: deoxyribodipyrimidine photo-lyase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 499 PF00875: DNA_photolyase" amino acids 15 to 184 (170 residues), 152.3 bits, see alignment E=1.2e-48 PF03441: FAD_binding_7" amino acids 295 to 497 (203 residues), 295.8 bits, see alignment E=1.3e-92

Best Hits

KEGG orthology group: K01669, deoxyribodipyrimidine photo-lyase [EC: 4.1.99.3] (inferred from 100% identity to bpy:Bphyt_6799)

Predicted SEED Role

"Deoxyribodipyrimidine photolyase (EC 4.1.99.3)" (EC 4.1.99.3)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 4.1.99.3

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T9J1 at UniProt or InterPro

Protein Sequence (499 amino acids)

>BPHYT_RS33665 deoxyribodipyrimidine photo-lyase (Burkholderia phytofirmans PsJN)
MTRVRRLNDSFDTGLVWFRRDLRSTDNAALYYALKHCERVWCVFVFDTTILQPLVEAWQA
RHPDTQPQDRRIELILGALGELDEALRANGGGLIVLYGDPADLVPKLADELGVDAVFANH
DYEPVAIARDETVRETLAEAGRQWLTFKDQVIFERDEVLTGQNKPFTVFTPYKNAWLKQL
TAFDLKPYPVESYTKHLAAPPSKLDRRLPTLDQLGFAPSNLAELDLPAGMSGAQRLLDDF
ATRIDSYKDRRDFPAAKGPSYLSIHLRFGTVSIRTLARLAHEMSLQPDGEGSTTWLSELI
WRDFYFMILAHHPRLANGASFKEEYDQLRWEQGPEADEAFAAWCDGRTGYPLVDAAMLQL
NRTGYMHNRLRMVTASFLVKDLGVDWRLGERYFAQQLNDFDFSANNGGWQWAASTGCDAQ
PYFRIFNPITQSEKFDAEGRFIKRYLPQLARLPSKWIHAPWLAGTERLAEFGVVLGKDYP
APIVDHAEARARTLARFGK