Protein Info for BPHYT_RS32945 in Burkholderia phytofirmans PsJN

Annotation: integrase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 291 PF13495: Phage_int_SAM_4" amino acids 11 to 90 (80 residues), 63.9 bits, see alignment E=2.3e-21 PF00589: Phage_integrase" amino acids 108 to 274 (167 residues), 129.5 bits, see alignment E=1.8e-41

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_6657)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (291 amino acids)

>BPHYT_RS32945 integrase (Burkholderia phytofirmans PsJN)
MTSLPANVSPLRQRMIDDMRMRQLAPKTQDIYLHIVREFARFLGRSPDTATVEDLRRYQL
YLVDHGTSAVSLNHAITGLKFFFTVTLDRPELIVRMQPVRVPRILPVVLSPDEVRRLIEA
AGNLKHQTALSVAYGAGLRASEVVALKVTDVDSERMTLRIEQGKGRRDRYAMLSPVLLER
LRVWWRMARAQGKMFDGGWLFPGLDPLDQLSTRQLNRAIHAAAEAAHIDKRVSMHTLRHS
FATHLLEQKVDIRVIQVLLGHAKLENTALYVQVATDLLHEVTSPLDRLPPG