Protein Info for BPHYT_RS32885 in Burkholderia phytofirmans PsJN

Annotation: methyl-accepting chemotaxis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 583 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details amino acids 196 to 217 (22 residues), see Phobius details PF12729: 4HB_MCP_1" amino acids 5 to 190 (186 residues), 60.5 bits, see alignment E=1.6e-20 PF00015: MCPsignal" amino acids 332 to 488 (157 residues), 180.6 bits, see alignment E=2.6e-57

Best Hits

KEGG orthology group: K05874, methyl-accepting chemotaxis protein I, serine sensor receptor (inferred from 100% identity to bpy:Bphyt_6645)

Predicted SEED Role

"Methyl-accepting chemotaxis protein I (serine chemoreceptor protein)" in subsystem Bacterial Chemotaxis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T941 at UniProt or InterPro

Protein Sequence (583 amino acids)

>BPHYT_RS32885 methyl-accepting chemotaxis protein (Burkholderia phytofirmans PsJN)
MNLSNLSVKAKLTGAFGLFAAIVLIVSGISLKSLNDANDRFANFVSGVNARANIAAQVRT
AVDRRAIAARNMALVTTPGDFETEKAAEAQAQMDVQSNIAKLNQMVSSATDATEKTRSLV
SEINRIETAYAPVAQAIVALAVGGKHDEAVKKIDDDCRPLLAALVKATDDYAQYTRTHEE
ELVQQSEEHYSAQRNLLMAISLAAVALAVVAGMVITRGLLRALGAEPVALDEVTRRVAAG
DLSPVAGAKNAPGGSVLASMGEMQASLVSLIGQVRTAADSIATGSSQIASGNVDLSSRTE
QQAASLQETASSMEELTSTVKQNAENAQQASSLSANASEVALKGNEVVSQVVGTMGEIST
SSTQIAEITGIIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSSSAAKE
IKDLINASVQKIHDGSLLANQAGKTMSEVTQAVARVTDIMGEIAAASTEQSRGIEQVNHA
ITQMDEVTQQNAALVEEAAAASKSLEDQGRQLNKAISFFRLEAGAVSTVMDGQASSVHRQ
VARKQPVRRTIGNTAAAARPLAASVASAGAATTAINNDGWDKF