Protein Info for BPHYT_RS32700 in Burkholderia phytofirmans PsJN

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 638 transmembrane" amino acids 25 to 45 (21 residues), see Phobius details amino acids 51 to 68 (18 residues), see Phobius details amino acids 75 to 94 (20 residues), see Phobius details amino acids 100 to 118 (19 residues), see Phobius details amino acids 125 to 143 (19 residues), see Phobius details amino acids 149 to 171 (23 residues), see Phobius details amino acids 302 to 322 (21 residues), see Phobius details amino acids 328 to 345 (18 residues), see Phobius details amino acids 356 to 373 (18 residues), see Phobius details amino acids 379 to 397 (19 residues), see Phobius details amino acids 404 to 423 (20 residues), see Phobius details amino acids 433 to 452 (20 residues), see Phobius details PF04632: FUSC" amino acids 304 to 387 (84 residues), 43.1 bits, see alignment E=2.5e-15 PF13515: FUSC_2" amino acids 316 to 443 (128 residues), 70.2 bits, see alignment E=1.9e-23

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_6606)

Predicted SEED Role

"INTEGRAL MEMBRANE PROTEIN (Rhomboid family)"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T903 at UniProt or InterPro

Protein Sequence (638 amino acids)

>BPHYT_RS32700 membrane protein (Burkholderia phytofirmans PsJN)
MIAAALSRVADRLLAADPGLVRLHTALRVALACLLTGLASIAWTVSQDQSITLAAPGILF
AMVAPLFVRDARRTAWFGTLFYLYLCACVCFAMASVLSRYPLAGDAGFLVVMFVGMLCQA
CGPRALGCAMLGVVCFYLGLYLHPSTAHVVQSLLLSAFGPLMVVLVGRVIVPMRVAASFR
LAVHTVTLRASRVLHAPVAAHLSALNEAALSLEEQLALLNPSNAETIRERIVEVEVAAGQ
YAFASGPADDAVKARGDVLRHAIARLKEIAQRSATRRDSSALTGAFVTLTAPQRFADLRS
KLCWLPATRATTAALLAMLIGHSLSPERWFWAVITTFVVFLGTRSRADTVYRGAQRLVGT
LAGALVSVLLVAPLHDSPVLLVIAMVLCVFGWAYYILSAYAPGVFFITVLVGLVYGELGF
AMGPLVELRIEEVLVGCLVSFAVAILMMPLAATRHVEARLAAVLGALRDVVRLSGAGPQA
AEAVVAMRKLDRSWHDLRIALRPLQTQRVVVWNPDVELATGSLLCCLHWARVLNGPARRD
GLQDAVALNAAEVGAAHVESIVARLDTLIARYGGGVGGAARNESDERGPMMPAIAFDVNR
APALAQLDGAVAQLFDRLMQPVSDTRRVFNWEVRGRGV