Protein Info for BPHYT_RS32485 in Burkholderia phytofirmans PsJN

Annotation: microcystin LR degradation protein MlrC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 496 PF07364: DUF1485" amino acids 2 to 285 (284 residues), 334.9 bits, see alignment E=4.3e-104 PF07171: MlrC_C" amino acids 298 to 477 (180 residues), 186.8 bits, see alignment E=4.5e-59

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_6568)

Predicted SEED Role

"FIG00453841: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2TBC9 at UniProt or InterPro

Protein Sequence (496 amino acids)

>BPHYT_RS32485 microcystin LR degradation protein MlrC (Burkholderia phytofirmans PsJN)
MKILIARMNHETNTFSPVATPLAAFGRNGPSYGEDAFNDNKGMQTAMAAFIDAAEREHAD
IVTPVSASANPSGPVEAAAYDAICEAIVSAAVGCDAVMLDLHGAMVAENSNDGEGDLLER
VRALLPDAPIAVALDLHGNVTQKMIDNADVIVSFKTYPHVDMYETGAHAARLMFDMVRGK
AKPVIAWRQPPLLTHTLRSATAEGAMKRAVDAARAAETEGMLAVSVLSGFSLADIEAPCI
SVVVVGDGDPEQAEAVAERIARQIWDEREDFVYRSAPLAESVAQAAALAADADKPVLLLD
HGDNCMSGGTCDTMDLLEEALKQKLEGIVSGPLCDPQAVAALMSAGVGSTVTVTIGNKVA
SDALKPRPPLSVTGVVRALTDGEYVISGPTYTGQRAFMGRAAVLDTGTVKLVMTERTHEP
WDLGVFESVGIDPRRARFLLLKSRMYCRPVFVPIAAALVECDSRGVTSSDYGLFAFRQVK
RPVYPLDTQAEWASAN