Protein Info for BPHYT_RS32335 in Burkholderia phytofirmans PsJN

Annotation: AsnC family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 142 PF13412: HTH_24" amino acids 3 to 49 (47 residues), 54.2 bits, see alignment E=1.3e-18 PF13404: HTH_AsnC-type" amino acids 3 to 44 (42 residues), 62 bits, see alignment E=5.4e-21 PF01037: AsnC_trans_reg" amino acids 70 to 142 (73 residues), 65.7 bits, see alignment E=4.3e-22

Best Hits

Swiss-Prot: 35% identical to GRP_ZYMMO: Glutamate uptake regulatory protein (grp) from Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4)

KEGG orthology group: K05800, Lrp/AsnC family transcriptional regulator (inferred from 100% identity to bpy:Bphyt_6537)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2TB98 at UniProt or InterPro

Protein Sequence (142 amino acids)

>BPHYT_RS32335 AsnC family transcriptional regulator (Burkholderia phytofirmans PsJN)
MNLDQFDRKILSLLQADASMPMSAVGDEVGLSQSQVWRRVEKLESGGVIVRRVAILDRMK
LGLTVQMFTQVKLNKHSERAGEKFKAAVEQYPEVVEIHTILGNVDFLLRIVTVDLNAYSK
LLADRLSSLPMVQEVHTLISLS