Protein Info for BPHYT_RS32250 in Burkholderia phytofirmans PsJN

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 514 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details transmembrane" amino acids 187 to 206 (20 residues), see Phobius details PF08269: dCache_2" amino acids 33 to 187 (155 residues), 93.3 bits, see alignment E=3.3e-30 PF17200: sCache_2" amino acids 36 to 185 (150 residues), 120.8 bits, see alignment E=1e-38 PF17201: Cache_3-Cache_2" amino acids 71 to 183 (113 residues), 37.2 bits, see alignment E=4.5e-13 PF00015: MCPsignal" amino acids 325 to 480 (156 residues), 180.4 bits, see alignment E=5.6e-57

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_6518)

Predicted SEED Role

"Methyl-accepting chemotaxis protein I (serine chemoreceptor protein)" in subsystem Bacterial Chemotaxis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2TB81 at UniProt or InterPro

Protein Sequence (514 amino acids)

>BPHYT_RS32250 membrane protein (Burkholderia phytofirmans PsJN)
MKRFSLNAKLWSALAMTWIGLLAFGGWATSELRSAMIADRKIAIQNVVETAYGIVDDYAK
LVDKGNLTLNEAQHQAMARLSTMRYGTNGFMVITTSKPVVLMHATVADLRDKDVSDFKDS
TGKRLFVEMVKVAQNEGQGYVDYLASVPSTGGTVRKTTFVKRFARWDWYLSSGLYMNDID
SAFESYFAEYLVVILLIGAAITAAMLKIIRNVKQSLGGEPAYAASIATNIAAGELRMDIA
LAANDRSSMMYAMQNMQGRLTSTVKRIHDGSEIILLAAKEIASGNQDLSVRTEEQAAALA
ETAASMEQLTATVKQTAENAHQANELGANASKIAEEGGDVVRQVVDTMQNIASSSERIAH
IISLIEGIAFQTNILALNAAVEAARAGEHGRGFAVVAGEVRNLASRSAEAAKEIKALIGE
SVGQVDAGSALVERAGSTMASVVRAVQRVTSVIEEIATASEEQSKGIEQVNVAIGQMDQT
TQQNAAMVEEASAAAHSLAEQAEELKKSVSAFRV