Protein Info for BPHYT_RS32230 in Burkholderia phytofirmans PsJN

Annotation: fatty acid desaturase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 314 transmembrane" amino acids 45 to 70 (26 residues), see Phobius details amino acids 150 to 169 (20 residues), see Phobius details amino acids 180 to 211 (32 residues), see Phobius details PF00487: FA_desaturase" amino acids 60 to 292 (233 residues), 105 bits, see alignment E=2.9e-34

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_6514)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2TB78 at UniProt or InterPro

Protein Sequence (314 amino acids)

>BPHYT_RS32230 fatty acid desaturase (Burkholderia phytofirmans PsJN)
MRSPASSSVIADQAAMHAALDSTGMDWRTPRARTWRSLSDIAADWAIICLTVWIAYRIGV
WASIAALFVIGNRQRALGNLLHEAGHQNLSKSRDVNDRIAYVFLAPPLFNELTLYRFQHA
WHHGSLGDPVHDPDYLSSVTRAGDHWFRVYLRVLTTPSTWAGSIFGHLISTRLALRQKFV
IVLWWAACEALLDITIGTHFALLFFALWIVARATVFHAITTFREMTDHYGLQPGGIFSYT
RDVPDHGISSVFMHPHHNGYHLTHHLFPHIPYPDLPEFHSRLRQISEFNRRAIICETYMW
GSCASVTKWEATHA