Protein Info for BPHYT_RS32010 in Burkholderia phytofirmans PsJN

Annotation: DEAD/DEAH box helicase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 863 PF04851: ResIII" amino acids 5 to 81 (77 residues), 29.5 bits, see alignment E=3.3e-11

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_6468)

Predicted SEED Role

"Superfamily II DNA/RNA helicases, SNF2 family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T8W1 at UniProt or InterPro

Protein Sequence (863 amino acids)

>BPHYT_RS32010 DEAD/DEAH box helicase (Burkholderia phytofirmans PsJN)
MTGLAKFQKRTVEVALERFNGKGPRRFLVADEVGLGKTIIARSVAEGLRKERRRLNVLYL
CPSLEIVGQNRSKFVSLTGIAEQDYATGEDRLTLVPGALPDEGNGYRIFTFTPETSLPGW
KPGPRTGRKAERALIRTLLERYDALRPIVLRMDREHGKATRCLLDECAAGLEGYTFAAIE
RALRDVFDCPTGSVEKAVVAWVQRADVNIGEFIGRFRAVLALTALRLPAVRPDLVVLDEF
HRYADLILPKPVETRDPLRVERARVHRLLVDALLGGEKPPAVLLLSATPYRLRRLSGEEM
HPVEHYRALVDLAGFLADDASCRDQVETAMRDYHDALRTPGSPQDVRSAVTDAKTRLEAL
LMPLMARTERALVHKEDLFEREMPKVEVEAADLKLFKHLAQICGSQFAGWAPQMWSSIPY
PAQTLHGYAVWKSICAAKAPPFEAGSGRGRLAHPQLRSLVGITGGALQLNLPWQPPTVGW
WRLEGPWSSGKPLPGKTLLFSRWRGAPTSISALLSIDLMGGIKLPGTKATPPLLRPGGTE
SGALVALFMPWPTLAHAIEPLKEASRTIVAVKRDAERQLQSFLERHGVSFTGKEKRPTWI
VACGIERQISRPGFNRIAAIALSARGSSKSRDWKSIEPVSTISRSELAALASHLLSAPGS
IIARCARRHDVPQEEKGEVAQAFDIGWNRLRGYLGHRAFVELILQSSRRTRYPDAMCDAI
LKGGFEAVLDEQMTLLGQLGDASGLDILEQLSNCLLDRPSLVQFRRGKNSKLRIPAQAVT
PFAGRDQGKAGKKSGRLRSDTLRRAFNSPFWPHVLCTTSVGQEGLDFHQWCRRIVHWDLP
GDPVDFEQRDEREHVNRWEFGAF