Protein Info for BPHYT_RS31855 in Burkholderia phytofirmans PsJN

Annotation: FAD-linked oxidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 538 PF01565: FAD_binding_4" amino acids 102 to 242 (141 residues), 105.3 bits, see alignment E=2.2e-34 PF02913: FAD-oxidase_C" amino acids 282 to 532 (251 residues), 107.7 bits, see alignment E=8.1e-35

Best Hits

KEGG orthology group: K00803, alkyldihydroxyacetonephosphate synthase [EC: 2.5.1.26] (inferred from 100% identity to bpy:Bphyt_6436)

Predicted SEED Role

"Alkyldihydroxyacetonephosphate synthase (EC 2.5.1.26)" (EC 2.5.1.26)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 2.5.1.26

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T8T2 at UniProt or InterPro

Protein Sequence (538 amino acids)

>BPHYT_RS31855 FAD-linked oxidase (Burkholderia phytofirmans PsJN)
MEAGMQERRRNFYGWGYEGDEVSREEIREFEQAWTRLLGVSDFEPVPFPTENSIKLREPR
VSVPESLKSICSTGQHDRLYHTYGASTVDVARAIRGEFRNPPDVVAYPRTEDDIVSLYRW
CEDASLAAVPYGGGTSVVGGVNPPTHDRYRGTVSIDMKHFDRVLEVDMKSQAARIQAGVL
GPHLEQQLKPTGLTLRFFLQAWEFSSLGGWIATRAAGHFATAYTQIDDHIESLKVVTPAG
NIESKRFPVSGAGPNPDRMFLGSEGALGIITEAWVKLHRRPIYRKMTSVRFTSYDDAVEA
VRIISQSGLNPANARLVEREEAAYTGSSDGSYDILVLGFESADHPVDPWMKRALEICGDH
GGRWDEAGLDGDHGNSDSGAKSWRDKFLRGPALREHAIARGVMRETMETAITWDRFAQLR
EHVKKETNRAIREVTGRPGSVTCRFTHIYPDGPAPYFTWFAYGDKSRIPEQYMAIKAIAE
QSMVDAGGTVTHHHALGRDHRPWYDKERPELFCTALKAAKTAFDPHSILNPGVLFDPS