Protein Info for BPHYT_RS31825 in Burkholderia phytofirmans PsJN

Annotation: integrase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 345 PF13551: HTH_29" amino acids 13 to 73 (61 residues), 58.3 bits, see alignment E=9.9e-20 PF13518: HTH_28" amino acids 14 to 56 (43 residues), 30.5 bits, see alignment 4.5e-11 PF13683: rve_3" amino acids 257 to 319 (63 residues), 41.2 bits, see alignment E=1.7e-14

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_6430)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T8S8 at UniProt or InterPro

Protein Sequence (345 amino acids)

>BPHYT_RS31825 integrase (Burkholderia phytofirmans PsJN)
MTQEQKVIRAKVGMLELARQLGNVSQACRVMGYSRDSFYRFKELYDKGGEAALQEISHHR
PLLKNRVDPQVEAAVIELALELPAYGQIRIANEVLKRHALSVSPQGVRSIWLRHDLETMN
KRLKALEAKSAQEGLVLTESQLTALERAKLEKETHGEFESECPGYCGAQDTFYVGTLKGV
GRVYQQTFVDTYSKVAFAKLYDRKTPLPAADLLNDRVVPFFDGYGIPLARVLTDRGTEYC
GNPEHHEYELYLAVENIDHTRTKARSPQTNGIVERLHKTMLNEFYRIAFRRKIYDSIAAL
HTDLDAWLDQYNNEREHQGRWCYGKTPMRTFLDSLELAREKLIPH