Protein Info for BPHYT_RS30970 in Burkholderia phytofirmans PsJN

Annotation: AraC family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 319 transmembrane" amino acids 29 to 43 (15 residues), see Phobius details PF00165: HTH_AraC" amino acids 229 to 269 (41 residues), 31.4 bits, see alignment 1.6e-11 amino acids 284 to 319 (36 residues), 28.7 bits, see alignment 1.2e-10 PF12833: HTH_18" amino acids 243 to 319 (77 residues), 73.1 bits, see alignment E=1.9e-24

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_6249)

Predicted SEED Role

"Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2TAY0 at UniProt or InterPro

Protein Sequence (319 amino acids)

>BPHYT_RS30970 AraC family transcriptional regulator (Burkholderia phytofirmans PsJN)
MDLGHTLQRSSPHSAAPMQTNALTRIDIALFNGFALPTVAALIEIFQRANSLVAAPRSGR
ARYDVSLLSAAGGRIASSSSVFVWTDDVQSHRGTNEPHLLFIAGGAGVQQACRDERLSEW
LRRRHPFSEIVHPIAEGQLLLQAAGLPSRYCPLLYGDNEAPGLHPARLTEAPGAVSTALR
IVEEDLGADLAQRVAESIAPQTRTPFSSSITPAVAPQISDKILASARWLEANVDRPVSID
DAAQVAAMSERNFLRRFKSEIGMTPSDYLLRARLNMSCRMLVESRLPVDKIARRCGIGSG
GQLSKLFRKYLETTPTDYR