Protein Info for BPHYT_RS30815 in Burkholderia phytofirmans PsJN

Annotation: 2-methylcitrate dehydratase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 428 transmembrane" amino acids 147 to 162 (16 residues), see Phobius details amino acids 173 to 191 (19 residues), see Phobius details PF03972: MmgE_PrpD_N" amino acids 5 to 243 (239 residues), 204.4 bits, see alignment E=1.7e-64 PF19305: MmgE_PrpD_C" amino acids 265 to 419 (155 residues), 110 bits, see alignment E=1.2e-35

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_6217)

Predicted SEED Role

"Immune-responsive protein 1"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T8I0 at UniProt or InterPro

Protein Sequence (428 amino acids)

>BPHYT_RS30815 2-methylcitrate dehydratase (Burkholderia phytofirmans PsJN)
MVGEKLGAWIADVHASALPAQTVEIARLLLLDVTGLCIAGRDEPYIRATLQATDAGGACT
ALGHAGSFSAFDAALINGTAAHGEDYDDTFEGGPVHSGAVVVPAVLAACEREGLGGEALL
RGIVVGTELMCRLSLVAPRAIHTAGFHPTAVIGALAAAGGVASALRLNPQQATSALGIAG
SMAAGIIEYLAEGTSTKRMHAGWAAQSGIRAALMARGGFDGPRTVLEGKHGFFKAFAPSR
APDFSPVLDTLGKSWIMETIAFKPYACGTMTQPYIDCAIALAERGVKAEEIRDIVCEVGE
GTVHRLWEELAVKHRPPTAYAAKFSTPFCMAVGFFDRKAGFSQFTEARIHDPAVLALAGK
IRYVIDPDNEYPSNFTGHLRATLNDGTVQEVRQPHMRGGAREPLSRAELATKFTDNAQHG
GWSAALAD