Protein Info for BPHYT_RS30610 in Burkholderia phytofirmans PsJN

Annotation: major facilitator transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 429 transmembrane" amino acids 20 to 38 (19 residues), see Phobius details amino acids 58 to 76 (19 residues), see Phobius details amino acids 94 to 111 (18 residues), see Phobius details amino acids 117 to 136 (20 residues), see Phobius details amino acids 148 to 171 (24 residues), see Phobius details amino acids 183 to 205 (23 residues), see Phobius details amino acids 246 to 267 (22 residues), see Phobius details amino acids 282 to 300 (19 residues), see Phobius details amino acids 312 to 331 (20 residues), see Phobius details amino acids 337 to 359 (23 residues), see Phobius details amino acids 368 to 391 (24 residues), see Phobius details amino acids 401 to 422 (22 residues), see Phobius details PF07690: MFS_1" amino acids 29 to 387 (359 residues), 169.6 bits, see alignment E=4.7e-54

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_6175)

Predicted SEED Role

"Nitrate/nitrite transporter" in subsystem Nitrate and nitrite ammonification

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T8D8 at UniProt or InterPro

Protein Sequence (429 amino acids)

>BPHYT_RS30610 major facilitator transporter (Burkholderia phytofirmans PsJN)
MSAIHPSAAGDPASALYSKLNWRLLPFLVTCYMFAYLDRVNVGFAKLQMQTDLGFSDAAY
GVGAGIFFIGYVLFELPSNLMLPKVGARRTFSRILVLWGITSACMLFVRSVPAFYAMRFL
LGVFEAGFAPGMIYYLSCWYGPARMARAIALVFVAGPLGGIVGGPVSAWLMTSLSGVGGL
AGWQWMFLVEGLPCIALGLLTLRVLSDRPEQARWLNDDEKLLLGRETAPTEHRADSFKAV
LKSPRVYVLAFAYFSIIFPIYAISFWLPTLLKEQGVSDTIRLGWYSAIPYVVAAVCMYLA
GRSSDRVGERRYHCAIPALGAAICLIAAIFADGNVMLTLTALTLGTACLWMAYTVFWAIP
SQLVEGTAAAGGIALINTVGLSGGFWGSAVVGWAKASTGSMHAGLFVMAGAAALAAILIL
TGKLTLKQD