Protein Info for BPHYT_RS30530 in Burkholderia phytofirmans PsJN

Annotation: ABC transporter substrate-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 337 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details TIGR01728: ABC transporter, substrate-binding protein, aliphatic sulfonates family" amino acids 42 to 322 (281 residues), 212.9 bits, see alignment E=2.9e-67 PF13379: NMT1_2" amino acids 63 to 268 (206 residues), 44.5 bits, see alignment E=4.6e-15 PF04069: OpuAC" amino acids 65 to 245 (181 residues), 33 bits, see alignment E=1.2e-11 PF09084: NMT1" amino acids 85 to 263 (179 residues), 53.7 bits, see alignment E=6.8e-18 PF12974: Phosphonate-bd" amino acids 98 to 247 (150 residues), 32.2 bits, see alignment E=2e-11 PF00497: SBP_bac_3" amino acids 126 to 255 (130 residues), 27.7 bits, see alignment E=4.9e-10

Best Hits

KEGG orthology group: K02051, sulfonate/nitrate/taurine transport system substrate-binding protein (inferred from 100% identity to bpy:Bphyt_6158)

Predicted SEED Role

"ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components" in subsystem Alkanesulfonate assimilation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T8C3 at UniProt or InterPro

Protein Sequence (337 amino acids)

>BPHYT_RS30530 ABC transporter substrate-binding protein (Burkholderia phytofirmans PsJN)
MALLNRRAFIRVALASSLTTLTTLTTRGYAQTSAANGQPIVLRIGYQKSSTLITLLKAGG
SLDKALAPLGVRVSWNEFSSGLPLTEALNVEAVDFSADVADTVPIFAQAAHARFVYVAQE
APSPGAQAIIVKQDSALHTLADLKGKRIAVTKAAGSHYLLLAALIKAGLTPADVRIRYLT
PADGRAAFERGSVDAWITWDPYVASVDRDADVRILADGKGLASYQRYYLASNRFAQAHPE
VIQIVFDQLTQAGEWLRAHPQDAAQTLAPIWGLDAATIERANARRSYLVRPVLAQNFGEQ
QKIADTFFQAGLLPAKVETAQAQRWDFGTKRGEPAGS