Protein Info for BPHYT_RS30450 in Burkholderia phytofirmans PsJN

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 619 transmembrane" amino acids 21 to 46 (26 residues), see Phobius details amino acids 61 to 78 (18 residues), see Phobius details amino acids 99 to 121 (23 residues), see Phobius details amino acids 141 to 162 (22 residues), see Phobius details amino acids 169 to 188 (20 residues), see Phobius details amino acids 199 to 230 (32 residues), see Phobius details amino acids 251 to 280 (30 residues), see Phobius details amino acids 290 to 313 (24 residues), see Phobius details amino acids 333 to 356 (24 residues), see Phobius details amino acids 363 to 386 (24 residues), see Phobius details amino acids 407 to 427 (21 residues), see Phobius details amino acids 433 to 453 (21 residues), see Phobius details amino acids 465 to 489 (25 residues), see Phobius details amino acids 509 to 541 (33 residues), see Phobius details amino acids 553 to 574 (22 residues), see Phobius details amino acids 593 to 614 (22 residues), see Phobius details PF04290: DctQ" amino acids 38 to 163 (126 residues), 96.9 bits, see alignment E=9.2e-32 PF06808: DctM" amino acids 205 to 613 (409 residues), 333.6 bits, see alignment E=1.7e-103 TIGR00786: TRAP transporter, DctM subunit" amino acids 214 to 615 (402 residues), 277.8 bits, see alignment E=6.4e-87

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_6142)

Predicted SEED Role

"Predicted gluconate TRAP family transporter, DctM subunit" in subsystem D-gluconate and ketogluconates metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T8A7 at UniProt or InterPro

Protein Sequence (619 amino acids)

>BPHYT_RS30450 ABC transporter permease (Burkholderia phytofirmans PsJN)
MISISYSHERQHRFACALDSALGHLVEIPAALLVLAEIVVLLAGVTSRYILHAPLVWSDE
LASMLFLWLAMLGAVIALRRGEHMRMTALVGMTPPGVRAFLDVVAIAAPIAFLAMVIGPA
ISFAQDESFITTPALELSNSWRAAALPIGSALMLLVAVVRLARMGNWRLVLGAVATVGAL
VGIFIALGPLLRDLGNLNLLIFFVGLVALGVLSGVPIAFSFGLATFGYLALTTNTPMPVV
VGRMDEGMSHLILLSVPLFVFLGQLIEMTGMAAAMIAFLASLLGHVRGGLSYVLVGAMYL
VSGISGSKAADMAAVAPVLFPEMKARGAKPGDLVALLAATGAQTETIPPSLVLITLGSVT
GVSISALFTGGMLPGIVLAITLCIVVQWRYRREDMSSVKRATRGEILRKLVIAFPALALP
FVIRAAVVEGIATATEVSTIGIAYAVLAGLLIYRRFEWKRLKPMLIDTATLSGAILLIIG
AATAMAWALTQSGFSGQLAQTLGALPGGAAMFMAASICMFVILGSVLEGIPAIVLFGPLM
FPIARAMHIHDVHYAMVVILSMGVGLFAPPFGVGYYSACAVSRIHPDEGMKPILGYIAAL
MAGLIIVAAVPWISTGFLH