Protein Info for BPHYT_RS29930 in Burkholderia phytofirmans PsJN

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 467 transmembrane" amino acids 32 to 52 (21 residues), see Phobius details amino acids 75 to 95 (21 residues), see Phobius details amino acids 107 to 127 (21 residues), see Phobius details amino acids 133 to 157 (25 residues), see Phobius details amino acids 169 to 190 (22 residues), see Phobius details amino acids 201 to 223 (23 residues), see Phobius details amino acids 263 to 284 (22 residues), see Phobius details amino acids 296 to 318 (23 residues), see Phobius details amino acids 330 to 349 (20 residues), see Phobius details amino acids 355 to 379 (25 residues), see Phobius details amino acids 392 to 413 (22 residues), see Phobius details amino acids 428 to 449 (22 residues), see Phobius details PF07690: MFS_1" amino acids 59 to 407 (349 residues), 102.5 bits, see alignment E=1.2e-33

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_6036)

Predicted SEED Role

"Permeases of the major facilitator superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T8A4 at UniProt or InterPro

Protein Sequence (467 amino acids)

>BPHYT_RS29930 MFS transporter (Burkholderia phytofirmans PsJN)
MSSITEPSGNSGSAPFFSKQATVAKPGFSRWMVPPAALAVHLCIGQAYAFSVFNGPLTKV
IGITQSSADDWSLTSLGWIFSLAIVFLGLSAAFAGKWLERVGPRRTMFTAACCFGGGFLV
SALGVYLHQIVLLYLGYGVIGGIGLGLGYVSPVSTLIRWFPDRRGMATGMAIMGFGGGAM
IAAPLSVALMNHFRSATSIGVAETFVVLGIAYFISMTIGALAIRVPPADWKPAGWTPSTT
GQNKMISRNHVHIDQALKTPQFYLIWLVLFLNVTAGIGILGQASVMIQESFKDTVTAAAA
AGFVGLLSLFNMGGRFVWASASDWIGRKNTYFIFFALGAVLYYLVPGFAASGHIALFVLA
YCVILTMYGGGFSTVPAYLADMFGTAFVGGIHGRLLTAWAAAGVAGPVLVNYIRAYEVAQ
GVAKADAYTMTVHIMAVLLVVGFICNLLIKRVDDKHHMSDAQLAKGA