Protein Info for BPHYT_RS29825 in Burkholderia phytofirmans PsJN

Annotation: glycosyl transferase family 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 384 transmembrane" amino acids 68 to 94 (27 residues), see Phobius details PF13439: Glyco_transf_4" amino acids 36 to 177 (142 residues), 31.6 bits, see alignment E=4.1e-11 PF20706: GT4-conflict" amino acids 145 to 350 (206 residues), 39.1 bits, see alignment E=1.2e-13 PF00534: Glycos_transf_1" amino acids 198 to 354 (157 residues), 123 bits, see alignment E=2.5e-39 PF13692: Glyco_trans_1_4" amino acids 203 to 342 (140 residues), 107.3 bits, see alignment E=2e-34 PF13524: Glyco_trans_1_2" amino acids 284 to 371 (88 residues), 45.9 bits, see alignment E=1.3e-15

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_6015)

Predicted SEED Role

"Glycosyltransferase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T879 at UniProt or InterPro

Protein Sequence (384 amino acids)

>BPHYT_RS29825 glycosyl transferase family 1 (Burkholderia phytofirmans PsJN)
MSKRENRETQATYVAPALRVLHVGPGQGQRGGIASVLAELDAQRARFQRAGIAVAIFETH
GFQSARSLLCFLLLDIPRFLFVLLMGVDLIHFHVSVRGSFYRKFTLYLLARLVRKKTIFH
LHAGNFLKFYVSSGSITRKAVYGFVRGADAVVAVSSAIAAELRGGHGITGNLYVIGNTAY
SAEVAAGAALREASDAKAADMAPYVAFAGRFTEGKGLDELLRATALLNRQGLTIQLKLAG
AGDTDRWARAAIEHGVGDQVSFVGWLQGDAKLAFYRDAALFCMPSHFEAFGISTLEAMFI
GRPVVGTRIGGFLDLVEEGVTGYLVPCEDVAELAERIRNLVESPELARTMGRQGVARALS
RYSVDAVVRQYVHCYRAVSECEGD