Protein Info for BPHYT_RS29550 in Burkholderia phytofirmans PsJN

Annotation: RND transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 506 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details TIGR01845: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family" amino acids 20 to 487 (468 residues), 433.3 bits, see alignment E=5.8e-134 PF02321: OEP" amino acids 85 to 276 (192 residues), 66.8 bits, see alignment E=1.2e-22 amino acids 304 to 485 (182 residues), 97.5 bits, see alignment E=4.5e-32

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_5958)

Predicted SEED Role

"RND efflux system, outer membrane lipoprotein, NodT family" in subsystem Multidrug Resistance Efflux Pumps

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T824 at UniProt or InterPro

Protein Sequence (506 amino acids)

>BPHYT_RS29550 RND transporter (Burkholderia phytofirmans PsJN)
MIDVNQRILRQRRLCVVLCGCAAVAGCMVGPDYRTPPAPATDTYTASPLPEQTASSPGAA
GLPQRFVPGQDIPAAWWVLFHCEPLDTLIRQALVNSPNIAAAQAALRQARENFSAQAGGT
LLPSVDAQLGATRQKFNGITFGEPGVVEEFNLYNASVNVSYKLDVFGGTRRELEALHAQV
DYQRFQLQAAYLAMSANIVTAAVKEASLRAQIEATEQIAAQEDEQFTVLGKQFELGGVGR
TAVLAQQTLLAQTRATLPPLQQQLDQVRHQLAVLAGKLPSDTALPEFRLEMFSLPEALPV
SLPSALVQQRPDILAADAVLHQASAQIGVATAAMYPQITLSASYGAEALTPAQVFKAGST
IWSLGAGLLQPVFHGGQLSAQKRAAEAAYEQADAQYRETVLLAFQNVADSLRALDHDATG
LQAQTQAWHAANDSLELTRGQYRVGGVSYLSLLDAQRQYQQTVVSLAQAQAARYADTAAL
FQALGGGWWNAAVPAAAAASAAAAAH