Protein Info for BPHYT_RS29425 in Burkholderia phytofirmans PsJN

Annotation: IclR family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 274 signal peptide" amino acids 1 to 16 (16 residues), see Phobius details TIGR02431: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family" amino acids 24 to 269 (246 residues), 356 bits, see alignment E=4.7e-111 PF09339: HTH_IclR" amino acids 31 to 79 (49 residues), 49 bits, see alignment 4.1e-17 PF01614: IclR_C" amino acids 94 to 267 (174 residues), 159 bits, see alignment E=9e-51

Best Hits

Swiss-Prot: 43% identical to PCAR_PSEPU: Pca regulon regulatory protein (pcaR) from Pseudomonas putida

KEGG orthology group: K02624, IclR family transcriptional regulator, pca regulon regulatory protein (inferred from 100% identity to bpy:Bphyt_5933)

Predicted SEED Role

"Transcriptional regulator, IclR family" in subsystem Homogentisate pathway of aromatic compound degradation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2TFF4 at UniProt or InterPro

Protein Sequence (274 amino acids)

>BPHYT_RS29425 IclR family transcriptional regulator (Burkholderia phytofirmans PsJN)
MSKALPPSSAVPVSAEPAPDKPGDSYVQSFARGLAVIRAFDATRPEQTLTDVAAATGLTR
AGARRILLTLHTLGYVEAEGRLFRLTPKILDLGFAYLTSMPFWNLAEPVMEQLSAQVHES
VSAAVLDRTEIVYVLRVPTHKIMTINLSIGSRLPAYCTSMGRVLLASLDDEALDATLGST
QLYAHTPRTVTDKEELKKLIAQVRRQGWAIVDQELEGGLISLSAPIRNRQGRVIAAMNIS
GNAQRNSGKQMVKAFLEPLQHAAQTVSEMVARRG