Protein Info for BPHYT_RS29295 in Burkholderia phytofirmans PsJN

Annotation: FAD-dependent oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 425 PF01266: DAO" amino acids 27 to 382 (356 residues), 242.8 bits, see alignment E=2.5e-75 PF12831: FAD_oxidored" amino acids 27 to 96 (70 residues), 32.3 bits, see alignment E=2.2e-11 PF01134: GIDA" amino acids 27 to 73 (47 residues), 22.3 bits, see alignment 2e-08 PF13450: NAD_binding_8" amino acids 30 to 69 (40 residues), 24.9 bits, see alignment 6e-09

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_5908)

Predicted SEED Role

"Opine oxidase subunit B"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2TFY7 at UniProt or InterPro

Protein Sequence (425 amino acids)

>BPHYT_RS29295 FAD-dependent oxidoreductase (Burkholderia phytofirmans PsJN)
MRFSSYWLDTSEPFVGNAPDLHGERCDVIVVGAGITGSAAALALARKGARVVVCEAGTVG
QAASGRNGGMCNNGFAQDYASLSQRIGVELANRLYLAFDAGVDTVERLVREESIDCDFVR
RGKLKLAAKPEHFDKLARSQALLAAGVDPDTRLVTKAELRDEIGSDRYHGGLIFEKSAGM
HVGRYVRGLATAAQARGAQILEHAPVLDLRRESGGAYVARTPRGEIRAPQVLLASGISQL
GPFGWVRRRIVPVGAFIIVTEPLPTQRLDRLLPTRRMATDTKNFVNFFRVTPDNRILFGG
RARFATSNPRSDEKSGMILRQQMIAVFPELADVRIDYCWGGMVDMTANRLPRAGERDGMY
YSMGYSGHGTHMATLMGTLMAEIMDGRADLNPWKDFDWPAIPGHFGKPWFLPFVGAWYRL
KDTLQ