Protein Info for BPHYT_RS28980 in Burkholderia phytofirmans PsJN

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 175 transmembrane" amino acids 6 to 27 (22 residues), see Phobius details amino acids 39 to 60 (22 residues), see Phobius details amino acids 72 to 89 (18 residues), see Phobius details amino acids 96 to 117 (22 residues), see Phobius details amino acids 134 to 156 (23 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_5845)

Predicted SEED Role

"FIG00794060: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2TFS5 at UniProt or InterPro

Protein Sequence (175 amino acids)

>BPHYT_RS28980 membrane protein (Burkholderia phytofirmans PsJN)
MSPEILFQTQLVLGYVAWLPCLVVYVLPRLKSMDRAGALRAIATLHSFRFFGLVFILPGV
VGPNLPAGFSQFAAYADFATGVLAMLALLTFRMRPIFYFFVFAFNVVGAADIVVDYYHAT
RLDLPAMAGQFGATYAIPIIYVPLLMLTHAVAFYLLMRPQTRAAWALAGDAASSR