Protein Info for BPHYT_RS28530 in Burkholderia phytofirmans PsJN

Annotation: 3-ketoacyl-ACP reductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 254 PF00106: adh_short" amino acids 10 to 186 (177 residues), 137.7 bits, see alignment E=7.1e-44 PF01370: Epimerase" amino acids 11 to 187 (177 residues), 23.3 bits, see alignment E=7.7e-09 PF08659: KR" amino acids 11 to 182 (172 residues), 38.8 bits, see alignment E=2e-13 PF13561: adh_short_C2" amino acids 17 to 246 (230 residues), 165.3 bits, see alignment E=3.7e-52

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_5751)

Predicted SEED Role

"Short-chain dehydrogenase/reductase SDR"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2TGC1 at UniProt or InterPro

Protein Sequence (254 amino acids)

>BPHYT_RS28530 3-ketoacyl-ACP reductase (Burkholderia phytofirmans PsJN)
MDLQLKGLKAVVTGGTKGIGLAIARTLAAEGAEVAICARDPAAVEATVSALTELSGARAS
GAAVDVSDGAALKAWVERIGSEWGGLDIVVANVSALAIGNDIESWRKEFETDLLGTVHLV
DAAMPYLEASRAASIVAISSVSGREIDFAAGPYGVFKAAIVHYIQGLANQLASKGIRANT
VSPGNVYFEGGVWDWIEHNDAALFERALALNPTGRMGRPQEIANAVAFIASPAASFVSGT
NFVVDGALTRGVQL