Protein Info for BPHYT_RS28200 in Burkholderia phytofirmans PsJN

Annotation: sugar ABC transporter substrate-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 335 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details PF13407: Peripla_BP_4" amino acids 35 to 291 (257 residues), 225.2 bits, see alignment E=5.4e-71 TIGR02637: rhamnose ABC transporter, rhamnose-binding protein" amino acids 35 to 335 (301 residues), 415.1 bits, see alignment E=8e-129

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_5681)

Predicted SEED Role

"Predicted L-rhamnose ABC transporter, substrate-binding component" in subsystem L-rhamnose utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2TFL9 at UniProt or InterPro

Protein Sequence (335 amino acids)

>BPHYT_RS28200 sugar ABC transporter substrate-binding protein (Burkholderia phytofirmans PsJN)
MFKPLRHTGTAALCVALLAISCAASAADLKSGLKIAFVPKQINNPYEVIADDGGMTAIKE
FKGVGKAVGPSDAGASSQVQYINTLITQRQDAIVIAANDANAVVPYLKKAMSQGIKVVTF
DSDTAPEGRQLFVNQANAEGIGRGQVQLVSKLMGGEGEFAVLSATPNATNQNTWIKWMQE
ELKKPEYSKIKLVKIAYGNDDDQKSFTETQGLLQAYPNLKAIVAPTTVGIAAAARYISTS
SSKGKVAVTGLGTPNQMRAFVKNGTVKAFQLWDPGQLGYLAAYAAAALASGTISGKEGES
FDAGKLGKRTIGPQGEIILGPPTTFDSSNIDNFNF