Protein Info for BPHYT_RS28160 in Burkholderia phytofirmans PsJN

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 414 transmembrane" amino acids 21 to 39 (19 residues), see Phobius details amino acids 59 to 82 (24 residues), see Phobius details amino acids 94 to 111 (18 residues), see Phobius details amino acids 117 to 138 (22 residues), see Phobius details amino acids 149 to 171 (23 residues), see Phobius details amino acids 180 to 201 (22 residues), see Phobius details amino acids 233 to 255 (23 residues), see Phobius details amino acids 263 to 286 (24 residues), see Phobius details amino acids 296 to 314 (19 residues), see Phobius details amino acids 320 to 342 (23 residues), see Phobius details amino acids 354 to 376 (23 residues), see Phobius details amino acids 385 to 404 (20 residues), see Phobius details PF07690: MFS_1" amino acids 44 to 370 (327 residues), 101.1 bits, see alignment E=3.2e-33

Best Hits

Swiss-Prot: 48% identical to CYNX_ECOLI: Cyanate transport protein CynX (cynX) from Escherichia coli (strain K12)

KEGG orthology group: K03449, MFS transporter, CP family, cyanate transporter (inferred from 100% identity to bpy:Bphyt_5672)

Predicted SEED Role

"Cyanate transport protein CynX" in subsystem Cyanate hydrolysis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2TFL1 at UniProt or InterPro

Protein Sequence (414 amino acids)

>BPHYT_RS28160 MFS transporter (Burkholderia phytofirmans PsJN)
MNSPSSANPARTPARHATAALGWQDIVWLAAIVVIGINLRPLLTSISPLMTTIRTATGLS
FYGASLLTSLPVVAMGVGAFGAGALTRTIGETRGVALGLLAIALACAARWTASSGAALLA
TALLAGVGVAAIQALLPVVMKQRFHARVPLAMGVFSASMMGGGGLGASLSPWVSRAAQSW
QAGLAVWAIPACIALLCWWALNRRPSSNSAADHAASTNADTVSLWRTRRAWTLGLYFGVV
NGGYTSLVAWLPAFYQQRGMSVAASGSLLAGMTVFQAAAALLLPLAAASFRDRRPWLALG
LTAQLAGLLGLIVWPDTAALLWVGLAGAGLGGTFSVTLVTAMDHSADHRMAGKLVAFTQG
VGFIVAAIAPVVAGVVRGWSGSFSVAWIMLAGCVVAMIAVGFLFSPRSYGEWRR