Protein Info for BPHYT_RS28065 in Burkholderia phytofirmans PsJN

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 165 PF02639: DUF188" amino acids 18 to 145 (128 residues), 154.9 bits, see alignment E=4.4e-50

Best Hits

Swiss-Prot: 100% identical to Y5655_PARPJ: UPF0178 protein Bphyt_5655 (Bphyt_5655) from Paraburkholderia phytofirmans (strain DSM 17436 / LMG 22146 / PsJN)

KEGG orthology group: K09768, hypothetical protein (inferred from 100% identity to bpy:Bphyt_5655)

Predicted SEED Role

"protein of unknown function DUF188"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2TFJ4 at UniProt or InterPro

Protein Sequence (165 amino acids)

>BPHYT_RS28065 hypothetical protein (Burkholderia phytofirmans PsJN)
MSIWVDADACPVVIKDMLYRAARRTNTTLTLVANSFLRVPPSPLIRAIQVPAGFDAADDL
IAERVAAGDLVITADIPLAAAVLAKNAQALDPRGNWYTPGTIEERLRMRSMLDQLRGSGV
DTGGPSAFSQRDSKSFAGELDRWLSRQRPQPDASAPQSADEPPTE