Protein Info for BPHYT_RS26785 in Burkholderia phytofirmans PsJN

Annotation: chemotaxis protein CheY

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1195 transmembrane" amino acids 20 to 43 (24 residues), see Phobius details amino acids 183 to 205 (23 residues), see Phobius details amino acids 261 to 278 (18 residues), see Phobius details PF05227: CHASE3" amino acids 45 to 178 (134 residues), 133.6 bits, see alignment E=1.6e-42 PF13185: GAF_2" amino acids 258 to 389 (132 residues), 50.4 bits, see alignment E=1e-16 PF01590: GAF" amino acids 260 to 384 (125 residues), 33.5 bits, see alignment E=2e-11 PF00512: HisKA" amino acids 489 to 556 (68 residues), 66.8 bits, see alignment 5.1e-22 PF02518: HATPase_c" amino acids 604 to 714 (111 residues), 104.6 bits, see alignment E=1.5e-33 PF00072: Response_reg" amino acids 808 to 917 (110 residues), 55.2 bits, see alignment E=2.6e-18 amino acids 930 to 1032 (103 residues), 58.3 bits, see alignment E=2.9e-19 amino acids 1076 to 1187 (112 residues), 89.8 bits, see alignment E=4.6e-29

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_5390)

Predicted SEED Role

"Signal transduction histidine kinase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2TBU9 at UniProt or InterPro

Protein Sequence (1195 amino acids)

>BPHYT_RS26785 chemotaxis protein CheY (Burkholderia phytofirmans PsJN)
MTASQAVDQNRFRSIIRRNIALPLGVGLVTIAVFVGLIAYLVSTMNWAEHSERVIGQANE
MLRLAVDRESSMRGFLITGDESFLAPFENGGPRFKTQIEALQQMVADNPPQVEKLKQIQA
IQQRWSRFAEEMIDARRRNQNFEAAVASGRGKIEFDETRREFGDFLDVELRLRQERSEAT
RRVTTILVSVFLLFSLGVSGLLAWMGRRELMSLSTTYDGALRQQAEQTEMLQEQVWLRSG
QRLLAEKVVGQTNSPLVGRAMLDFLAQYLDAVVAALYVRDKQHGTLRRIATYGFSRESEQ
AAARSFAEGETLIGQAAAARRTLVLRDVPADYVQVVSATGKSAPKNLLVMPIENDGQVNG
VVELGFIRELGVRDQEFMELIAKSMGDFVEAALYRERLQDALAETQQLNEELQVQQEELR
VSNEGLEERGRALMESQTRLEAQQAELEQTNVQLEEYAQRLERQKSDLLRAQDDLAANAA
RLEQSSRYKSEFLANMSHELRTPLNSSLILAKLLQQNRTGNLTEEQVRYAETIHASNSDL
LVLINDILDLSKVEAGQVTVELETVSIDATLQALEETFKPLAGARHLSLAFDRLPGTPDT
FITDGQRVTQILRNLLSNAVKFTERGEVALSVAPAEGGMLRFDVRDSGIGIAADKLDMIF
EAFQQADGSTSRQYGGSGLGLSISREFSRLLGGRITVASEVGKGSVFTLWLPLDAEAALN
ASQDAHHATAPMFAPAQAPAGAQAVAEPTTEPLLAHPLSRGSQPTVITPANGLISGSTSG
LTNGNSPETTRSPIADDRDNRTRAGRLIIAVEDDAAFAEILRDLTHELDFDFVHASSAAS
GLALVRDMRPAAVLLDVGLPDRSGLTVLEWLKNDPLTRHIPIHIVSATDHADKALHLGAI
GYTLKPTARSTMEAAIRRLEARLQQRLKRVLVIEDDAPMRESIRALLQSENTEIVAVATL
TEALEYLGKFSFDCVVTDLALPDGTGYDLLERLAANTAHAALPVIVYTGRMLSDEEEHRL
RRYSKSIIIKGAKSPERLLDEVTLFLHSVESSLAPEQQRMLRTVRQRDNAFEGRTILLAE
DDVRNIFALSHVLEPLGAKLQIARNGREALEALENGPEVHLILMDIMMPEMDGLTAMGEI
RRDPRFAHLPIIALTAKAMANDRTRCLEAGADDYVSKPIDVDKLVALCRVWLRQR