Protein Info for BPHYT_RS26725 in Burkholderia phytofirmans PsJN

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 429 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details transmembrane" amino acids 42 to 62 (21 residues), see Phobius details amino acids 401 to 424 (24 residues), see Phobius details PF04286: DUF445" amino acids 44 to 420 (377 residues), 409.8 bits, see alignment E=1e-126

Best Hits

Swiss-Prot: 55% identical to YJIN_ECOLI: Uncharacterized protein YjiN (yjiN) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_5378)

Predicted SEED Role

"probable membrane protein STY4873"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2TBT5 at UniProt or InterPro

Protein Sequence (429 amino acids)

>BPHYT_RS26725 hypothetical protein (Burkholderia phytofirmans PsJN)
MNKAIELKKAKRTPLLLLIAAACVFLVTAFMPRGIWVDGIKAVAEAAMVGALADWFAVAA
LFRRVPIPVVSAHTAIIPRNKHKIADNLAVFVQDKFLDVPSLVGLIQKHDPARSITAWLT
QPENTARLGDYVVKLTSGILELTDDVRIQVFIKDALRDVLAKVDLSQSMGSILDTLTKDG
RHQELLDAGIEQVVALLREPHAREFIAERIVEWVKAEYPKMEKILPSTFSTWLGDKGAET
IANAVNRILEQISENPTHQLRQKFDDAAHKLIVKLKTDPAFLQKGEELKRYLVEGDALSS
YVKDMWSELRAWLKRDLQSSDSALHARVVAMGQWVGRELAHDPALRQSLNDHLEEAARTM
APDFARFLTRHISDTVKNWDSHEMSRQIELNIGKDLQYIRINGTIVGGFIGLLLYASSQL
LGLLRLHMG