Protein Info for BPHYT_RS26540 in Burkholderia phytofirmans PsJN

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 361 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details TIGR03118: TIGR03118 family protein" amino acids 35 to 358 (324 residues), 369.5 bits, see alignment E=7.2e-115

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_5340)

Predicted SEED Role

"conserved hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2TBP7 at UniProt or InterPro

Protein Sequence (361 amino acids)

>BPHYT_RS26540 hypothetical protein (Burkholderia phytofirmans PsJN)
MKSVLKALGVVVGGAALVSLVASCGGSDSVNNQSFTSTALVSDGAVAAAHTDPNLKNAWG
VAFNPKGFVWVADNATSLATLYDGNGTPQSLVVSIPNGINGPANPTGIVFNGTTDFVVTQ
GAKSGVGAFIFAGEGGTITAWAPAVGPTNAFVVFDSGSAAAVYKGLALASNGGANFLYAA
DFHNNRIDVFDKSFVKVSTPGKFQDASLPAGFAPFGIQAIGTKLFVTYAKQDAAAHDNVD
GPGLGFVDVYDAAGNLLQRFASGGVLNAPWGIAQAPANFGRFSGDVLIGNFGDGTINAFD
PASGRSLGAINLPDNTSFVQHGLWGIAFGNGLSNQPVNTLFFAAGPNDEANGVYGRIDVK
M