Protein Info for BPHYT_RS26320 in Burkholderia phytofirmans PsJN

Annotation: ATPase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 776 PF00989: PAS" amino acids 12 to 103 (92 residues), 23.2 bits, see alignment E=2.4e-08 amino acids 284 to 391 (108 residues), 37.2 bits, see alignment E=1.1e-12 TIGR00229: PAS domain S-box protein" amino acids 13 to 130 (118 residues), 41.8 bits, see alignment E=5.3e-15 amino acids 181 to 277 (97 residues), 34.6 bits, see alignment E=9.1e-13 amino acids 284 to 401 (118 residues), 70.5 bits, see alignment E=7.1e-24 PF08448: PAS_4" amino acids 15 to 113 (99 residues), 30.4 bits, see alignment E=1.6e-10 amino acids 286 to 395 (110 residues), 49.4 bits, see alignment E=2e-16 PF13426: PAS_9" amino acids 20 to 103 (84 residues), 27.8 bits, see alignment E=1e-09 amino acids 290 to 392 (103 residues), 49.3 bits, see alignment E=2e-16 PF08447: PAS_3" amino acids 180 to 264 (85 residues), 61.1 bits, see alignment E=4e-20 amino acids 306 to 387 (82 residues), 27.1 bits, see alignment E=1.7e-09 PF13188: PAS_8" amino acids 281 to 331 (51 residues), 27.7 bits, see alignment 7.9e-10 PF00512: HisKA" amino acids 415 to 480 (66 residues), 53.6 bits, see alignment E=7.8e-18 PF02518: HATPase_c" amino acids 527 to 638 (112 residues), 96.4 bits, see alignment E=5.9e-31 PF00072: Response_reg" amino acids 660 to 770 (111 residues), 75.6 bits, see alignment E=1.4e-24

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_5296)

Predicted SEED Role

"Chemotaxis protein methyltransferase CheR (EC 2.1.1.80)" in subsystem Bacterial Chemotaxis (EC 2.1.1.80)

Isozymes

Compare fitness of predicted isozymes for: 2.1.1.80

Use Curated BLAST to search for 2.1.1.80

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2TDE8 at UniProt or InterPro

Protein Sequence (776 amino acids)

>BPHYT_RS26320 ATPase (Burkholderia phytofirmans PsJN)
MHNTDRPLPSADALFEHAACGLLVTDADGRILRVNATFCGWLGYESAELTGARHIQDLLS
AGGKVFYQTHWAPLLQMQGSVAEVKLNMAHRDGHMVPMLLNAVRHCHGDVTYLEVAVLIV
ADRHKYEQELLLARRNAEASVAAHQRAQRELQESRDVLSLAMRGARMGAWSHEPKSGKFW
WSRELEALAGYAEGRFADTPGGFFELIHPGDLIALNEAVDHAVESGDDYVAEFRFLHASG
DWCWMEGRGRATYDRHGEPLTIYGLGIDITERKEAQTVLLRQAAIFEHLSDAIVITDLRG
NITDFNVGGERMLGYRMREILGKPVALFLPPEETLNIRREALAALAAEGTWRGELPFVRR
DGSRGVCETVIKPLANARGDIYGAVSINRDITGRRHAEQQLTRLNLELSKADRRKDEFLA
TLAHELRNPLAPMRNVLEILRLKEFADPQLSWSRDVFDRQLQHMTHLVDDLLEVSRITQG
KLELRKQRLELARAMQSAMEAARPTVQASSHHLSVTLPREPLYLVADPTRLSQMILNLLN
NAAKYTPPGGTISLAAERDGDEAVIVVRDSGIGIPAEHLNSVFEMFSQLAPALDRSQGGL
GIGLALVRGLAELHGGTVAAFSDGPGKGSEFVIRLPVTKAAMQPSDSAPVEVPHAGGLRV
VIVDDNADAAESLAMVLGLEGHEVRTAGDGLAGLELIGAFEPQAVILDIGLPQLNGYEVA
RRIRQDYPDAGIVLIAVTGWGQQQDKQTALAAGFDHHFTKPVDPGELQRVLSRQRV