Protein Info for BPHYT_RS26210 in Burkholderia phytofirmans PsJN

Annotation: ankyrin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 178 PF13637: Ank_4" amino acids 27 to 75 (49 residues), 22.9 bits, see alignment E=2.1e-08 amino acids 59 to 99 (41 residues), 32.2 bits, see alignment 2.7e-11 amino acids 98 to 141 (44 residues), 25.1 bits, see alignment E=4.6e-09 amino acids 122 to 163 (42 residues), 24.9 bits, see alignment 5.3e-09 PF12796: Ank_2" amino acids 30 to 115 (86 residues), 51.9 bits, see alignment E=2.3e-17 amino acids 119 to 166 (48 residues), 28.6 bits, see alignment E=4.5e-10 PF13857: Ank_5" amino acids 42 to 92 (51 residues), 37.2 bits, see alignment E=7.4e-13 amino acids 107 to 159 (53 residues), 32.1 bits, see alignment E=3e-11 PF13606: Ank_3" amino acids 55 to 82 (28 residues), 17.4 bits, see alignment 1.3e-06 amino acids 120 to 148 (29 residues), 25.9 bits, see alignment 2.1e-09 PF00023: Ank" amino acids 55 to 86 (32 residues), 28.4 bits, see alignment 3.6e-10 amino acids 87 to 114 (28 residues), 15.3 bits, see alignment 5.2e-06 amino acids 120 to 151 (32 residues), 30.5 bits, see alignment 7.4e-11

Best Hits

Swiss-Prot: 60% identical to Y3287_PSEAE: Putative ankyrin repeat protein PA3287 (PA3287) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

KEGG orthology group: K06867, (no description) (inferred from 100% identity to bpy:Bphyt_5275)

Predicted SEED Role

"FOG: Ankyrin repeat"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2TDC3 at UniProt or InterPro

Protein Sequence (178 amino acids)

>BPHYT_RS26210 ankyrin (Burkholderia phytofirmans PsJN)
MTDHADTSPSSGQPLDPELLELAHQVFDLARRGDAAMLAAVIEKGVPPNLRNDKGDSLVM
LASYHGHADAVRTLLEHGADPNLRNDNGQTPIAGAAFKGFDKVIETLLAHGADVEGASPD
GRTALMIAAMFNRTAIMELLIARGADPKARDANGVTAMDAAGRMGAGDAQARLKELGS