Protein Info for BPHYT_RS26190 in Burkholderia phytofirmans PsJN

Annotation: lysine transporter LysE

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 210 transmembrane" amino acids 6 to 29 (24 residues), see Phobius details amino acids 41 to 69 (29 residues), see Phobius details amino acids 75 to 92 (18 residues), see Phobius details amino acids 113 to 135 (23 residues), see Phobius details amino acids 151 to 179 (29 residues), see Phobius details amino acids 189 to 206 (18 residues), see Phobius details PF01810: LysE" amino acids 17 to 207 (191 residues), 110.4 bits, see alignment E=4.1e-36

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_5270)

Predicted SEED Role

"Putative threonine efflux protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2TDB8 at UniProt or InterPro

Protein Sequence (210 amino acids)

>BPHYT_RS26190 lysine transporter LysE (Burkholderia phytofirmans PsJN)
MPAFTTLLAFGLVSLGMVLTPGPNMIYLVSRSLCQGRRAGLISLGGVALGFVFYMFCAAF
GITALLLTVPYAYDALRFGGALYLLYLAWQAVKPGGRSPFQVRDLPHDSRRKLFTMGLVT
NLANPKIAVMYLSLLPQFISPGHGSVLSQSIALGCVQIVVSVTVNALIASMAGSIAVFLG
GRPVWLQVQRWLMGTVLAGLAVRIALDSRR