Protein Info for BPHYT_RS26165 in Burkholderia phytofirmans PsJN

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 234 PF04337: DUF480" amino acids 16 to 161 (146 residues), 190.3 bits, see alignment E=1e-60

Best Hits

Swiss-Prot: 100% identical to Y5265_PARPJ: UPF0502 protein Bphyt_5265 (Bphyt_5265) from Paraburkholderia phytofirmans (strain DSM 17436 / LMG 22146 / PsJN)

KEGG orthology group: K09915, hypothetical protein (inferred from 100% identity to bpy:Bphyt_5265)

Predicted SEED Role

"Virulence factor mviM"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2TDB3 at UniProt or InterPro

Protein Sequence (234 amino acids)

>BPHYT_RS26165 hypothetical protein (Burkholderia phytofirmans PsJN)
MNSTPDASSRPSIRALTLLEGRVLGVLVEKQHTVPDSYPLSLNALTLGCNQKTGRAPVMN
ATEAEVLTAVDGLKRLSLVMEGSSSRVPRFEHNMNRVLGLPSQSAALLTILLLRGPQTAA
ELRLNSARLHGFADISSVEAFLDELAANDPPRVVKLARVPGERENRWMHLLCGEVSVSEL
AQPGDEDDSVPLSAFEAVKAEQKRLADEVSRLQTLVRRMAAELGIDAGDLTAGE