Protein Info for BPHYT_RS25855 in Burkholderia phytofirmans PsJN

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1253 PF13542: HTH_Tnp_ISL3" amino acids 818 to 864 (47 residues), 33 bits, see alignment (E = 3.3e-11)

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_5205)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2TCZ0 at UniProt or InterPro

Protein Sequence (1253 amino acids)

>BPHYT_RS25855 hypothetical protein (Burkholderia phytofirmans PsJN)
SYASGEDASVSQEDTESSVDKSGASSAPSQDTSQADRAKKLPIAPQPLDQRSAAAASTPS
RSSGTDSARTAGSGRSSGTTSTAATLSRGATGTTPSTGGADITHSDTLPGATAAEFTDLL
KEYDTGDHAAHKNSDRNMEVAKYMEFGVGLEMTGYPPDVVRFEKSQLDVRGLLVDLPLSQ
REFYGSALATLSAAYKLETDPKKRLAILEKALELDGVIRNASARAANDPVDRVLSIFQPP
MGEGYLSLSGREDVDRLARLQEDFLDARDPAERKAIFKLAVEIKARLQQLIGIAVNVDQY
GQLEQWEEANKEVDRILKEAEAQTDPAKRYELIGRQLFQITPGQDRLKDKVLLAFTQRMY
TSAELRNKLNAWHIQVTSPLNAHGVGGPKRYTDILGKLPPVSDDYVRDLSDLYTDVLSDT
SHRNHSITPKVRAARLATQILEGVMRVMLEMTPIGFLADQIPSTLPDNVRMGLEFGGMML
DLITGAGVGKQVGRGAKALAAAARKTELDNLAGKVVRAGGKGLVDDASERIARETLADER
LSPEAKATAQVLERKALVETGPAVDPVSELAHEAVGINSYGSLATYADPHVVPGSLRRGA
QPGILEDSKGDRYIELGGKAYRVRFDRDNDTWRVFDPAASWRPQYPVRLNEKTNTWEVHG
DVGLMGGKPKISDGVVQEIVRLLKEGDMSQQQIATRMGVSMAFVRNTASDYSIRQSAPGS
VRNQPIPPATREAAIRLLREGDLSRSDIAARLGISRAFVSTLAKSNNIAVLANTISPEIR
LQVEKLLAEGSLSTTEIGRKVGISANSVLNIRSGMKSLPAHRWHRKITAAVRADIIRQLT
EGASQREVARANGVSRNSVWRIARQERLPVKVLRAPATPEQIDQVFALRGQGKTIRVVAS
TVGLSETTVKDICANVNADTYKRSWWDTTPEKRTAVLRQLDQGKAAKEIAKEQGLPVETV
RGIANQQRMARDSLASELLREGQSFIEVGDKLGIPPEYVLRLRHKVPPGTHDIHDIQLNS
ADGAVAEDMFKKGYTREDVAEKLGISLWKAHSLANEYRSKTMDSVMPKQLADLVAALDDQ
DRTFTTGELARATGLPETTVMVVEREYEMGSIVSHAASPQPGPSHGTASVGVSYEWIRPL
TAEQEGQAIRALDDGQRLKQVADGLHVDVAAVERLYEQDLPLVAPADDPIDPLPAAAPAP
TTPSTTTPPPATVVLSEADKIEIRKLARDDQLSPEFIANLFEIPLDEVKKVLA