Protein Info for BPHYT_RS25785 in Burkholderia phytofirmans PsJN

Annotation: sugar ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 352 transmembrane" amino acids 40 to 57 (18 residues), see Phobius details amino acids 69 to 88 (20 residues), see Phobius details amino acids 94 to 115 (22 residues), see Phobius details amino acids 120 to 142 (23 residues), see Phobius details amino acids 158 to 177 (20 residues), see Phobius details amino acids 198 to 219 (22 residues), see Phobius details amino acids 247 to 268 (22 residues), see Phobius details amino acids 277 to 295 (19 residues), see Phobius details amino acids 304 to 324 (21 residues), see Phobius details amino acids 330 to 348 (19 residues), see Phobius details PF02653: BPD_transp_2" amino acids 66 to 342 (277 residues), 124.1 bits, see alignment E=2.9e-40

Best Hits

KEGG orthology group: K02057, simple sugar transport system permease protein (inferred from 100% identity to bpy:Bphyt_5190)

Predicted SEED Role

"Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)" in subsystem D-ribose utilization (TC 3.A.1.2.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2TCX5 at UniProt or InterPro

Protein Sequence (352 amino acids)

>BPHYT_RS25785 sugar ABC transporter permease (Burkholderia phytofirmans PsJN)
MNSRIDSRLNQTMTTPTVVEVAPEVKPPSLRTKLARNPEWFTLALIAVTCLIVGAINPRF
FQLATLFDLLHSATTMSLFALGTLVVLASGGIDVSFTAIAALTMYGITKAVFAWWPDAPF
ALILITGALGGVVLGIVNGLLVHRLKAPSLIVTIGTQYLYRGLLLTFIGTTFFMNIPHSM
DRFGRIPLFFYHTADGLRAVLPVSVVALVAAAVVTWWLLNRTMMGRGVYAMGGSLAIAER
LGYNLRAIHLFVFGYTGMLAGIAGILHVSNNRLANPFDLVGTELDVIAAVILGGARITGG
TGTVAGTLLGVVLVTLINSVLILVGVPSTWQKVIIGAFILIAGTLFALQRKN