Protein Info for BPHYT_RS25580 in Burkholderia phytofirmans PsJN

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 157 transmembrane" amino acids 22 to 39 (18 residues), see Phobius details amino acids 75 to 97 (23 residues), see Phobius details amino acids 103 to 121 (19 residues), see Phobius details amino acids 129 to 150 (22 residues), see Phobius details PF07681: DoxX" amino acids 26 to 119 (94 residues), 60.8 bits, see alignment E=8.5e-21

Best Hits

KEGG orthology group: None (inferred from 99% identity to bpy:Bphyt_5146)

Predicted SEED Role

"INTEGRAL MEMBRANE PROTEIN (Rhomboid family)"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2TCT3 at UniProt or InterPro

Protein Sequence (157 amino acids)

>BPHYT_RS25580 membrane protein (Burkholderia phytofirmans PsJN)
MPDVVVSAIGTARRLIQQLAQPWLVQLVLRLALAVPFWKSGILKWHGFLQLSDTAIDLFT
DEFKLHLPGGPYPFPAPAVFAFLSGLGEVTFPVLLVLGLGTRFAAAGLILMTCIVELTVP
DGWPIHLTWLAMALGIAAWGPGLISIDYLLGDRSPRS